木质素过氧化物酶基因5'端上游调控序列的分析

黄孢原毛平革菌（Ｐｈａｎｅｒｏｃｈａｅｔｅｃｈｒｙｓｏｓｐｏｒｉｕｍ）能产生降解木质素的胞外木质素过氧化物酶（ＬＩＰ） 和锰过氧化物酶（ ＭｎＰ）同工酶。为研究ＬＩＰ基因的转录调控机理, 对ＬＩＰ基因（ ＧＬＧ３ 和ＧＬＧ６） 的５′端上游序列进行亚克隆, 获得６ 个亚克隆ＤＮＡ 片段, 然后应用凝胶迁移率变动分析技术筛选能与菌体蛋白质专一性结合的ＤＮＡ片段。结果表明： ＬＩＰ基因ＧＬＧ６ 的５′端上游有一个约６７０ ｂｐ 的ＤＮＡ 片段能与总蛋白质组分专一性结合, 其核苷酸序列分析表明该片段可能含有蛋白质结合的序列特征。研究结果初步显示, 黄孢原毛平革菌可能存在有与ＬＩＰ基因上游某些顺式调控元件相互作用的蛋白质, 调控着ＬＩＰ基因的转录表达。     

AmbiPack: A systematic algorithm for packing of macromolecular structures with ambiguous distance constraints

The determination of structures of multimers presents interesting new challenges. The structure(s) of the individual monomers must be found and the transformations to produce the packing interfaces must be described. A substantial difficulty results from ambiguities in assigning intermolecular distance measurements (from nuclear magnetic resonance, for example) to particular intermolecular interfaces in the structure. Here we present a rapid and efficient method to solve the packing and the assignment problems simultaneously given rigid monomer structures and (potentially ambiguous) intermolecular distance measurements. A promising application of this algorithm is to couple it with a monomer searching protocol such that each monomer structure consistent with intramolecular constraints can be subsequently input to the current algorithm to check whether it is consistent with (potentially ambiguous) intermolecular constraints. The algorithm AmbiPack uses a hierarchical division of the search space and the branch-and-bound algorithm to eliminate infeasible regions of the space. Local search methods are then focused on the remaining space. The algorithm generally runs faster as more constraints are included because more regions of the search space can be eliminated. This is not the case for other methods, for which additional constraints increase the complexity of the search space. The algorithm presented is guaranteed to find all solutions to a predetermined resolution. This resolution can be chosen arbitrarily to produce outputs at various level of detail. Illustrative applications are presented for the P22 tailspike protein (a trimer) and portions of β-amyloid (an ordered aggregate). Proteins 32:26–42, 1998. © 1998 Wiley-Liss, Inc.     

Variations in the content of free and bound amino acids during dormancy and the first cell cycle in Helianthus tuberosus tuber explants

Abstract

Qualitative and quantitative analysis of free and bound amino acids and amides during dormancy and the most important phases of the first cell cycle was carried out in tubers of Helianthus tuberosus.

In the dormant tuber arginine was confirmed to be the most abundant amino acid. A high amount of asparagine was also present; on the contrary glutamine was found in very low concentrations. During the progression of dormancy, all the free amino acids and amides declined while aspartic and glutamic acid increased.

During the G₁ phase of the first cell cycle induced by 2,4-D, all the free amino acids and amides decreased with the exception of glutamic acid.

At 18, 20, 24 h of activation with 2,4-D, corresponding to the S phase and the beginning of mitosis, bound amino acids were also determined. In these phases of the cell cycle they increased reaching a maximum at 20 h; on the other hand the free amino acid and amide content, especially aspartic acid, asparagine and arginine, decreased with the exception of glutamic acid, alanine and phenylalanine.     

The measurement of water relations of plant cell culture. I. Water release in response to centrifuge-induced water potentials

Water loss by cell suspensions during centrifugation is well defined by simple physical principles. The major factors affecting water release during centrifugation are: duration of centrifogation, depth of the cell mass, density of cells, relative centripetal acceleration and centripetal force. Water release during centrifugation was best described by an exponential decay process with a decay constant that increases with acceleration from 0.31 ± 0.01 to 0.66 ± 0.12 min^?1 (mean ± SE) between 4 825 and 19 300 m s^?2, respectively. The cell mass relative water content (RWC) at equilibrium was not a function of rate of water loss and was constant for each acceleration. A centripetal force was generated by the mass of the cells being accelerated away from the axis of rotation. This force generated a pressure that removed some of the cell wall and symplast water, by compression at contact points between the cells and by compression of the cytoplasm. Pressure induced by centripetal forces ranging from ?0.02 to ?0.23 MPa gave a linear relationship (r² > 0.99) between force and RWC. The slope (0.900 MPa) was proportional to the cell wall modulus of elasticity (±). and the intercept was interpreted to give the mass of the cells at full turgor without interstitial water (RWC=1). This interpretation is supported by the findings, of two independent experiments. Centrifuged cells suspended at 100% relative humidity for over 48 h reached the same water content as predicted by the intercept. Interstitial water was labelled with solutions of polyethylene glycol (PEG. M_r 8 000), the diameter of which was too large to enter the pores of plant cell walls. Centripetal accelerations greater than 10 900 m s^?2 removed PEG-labelled water to levels below 0.9% of cell water content. Removal of interstitial water and other loosely bound water provided a convenient method for determination of growth, RWC and ±. The centrifugal methods provide the foundation for new quantitative methods for cell culture water relations analyses.     

Characterization of a membrane bound β-glucosidase responsible for the activation of oat leaf saponins

Oat leaves contain a β-glucosidase (= avenacosidase) specific for the cleavage of the C-26 bound glucose moiety of the oat saponins avenacosides A and B. This transformation activates the fungitoxicities of the avenacosides. Evidence is presented that this enzyme is bound to the tonoplast membrane. The solubilized enzyme showed a pH optimum of 6.0–7.0, a temperature optimum around 40°, a molecular weight of 68 000±3000 and a K_m of 183 (±16) μM. The enzyme is inhibited by Hg²⁺ (10^-2 M) but not by Cu²⁺ (10^-2 M).     

Fate of [carbonyl-14C]methabenzthiazuron in an arid region soil — effect of organic amendment,soil disturbance and fumigation

[Carbonyl-¹⁴C] methabenzthiazuron (MBT) was applied to an arid region soil at a rate of 5mg kg⁻¹ soil to give a¹⁴C content of 2400 KB kg⁻¹ soil. After 15 weeks of incubation at 22°C and 50% of the maximum water holding capacity of the soil, 7.2% of the applied¹⁴C was mineralized to¹⁴CO₂. Where the soil was amended with wheat straw, total mineralization increased to 17.3%. Soil disturbance caused a significant increase while chloroform fumigation caused a significant decrease in the rate of¹⁴CO₂ production, both from amended and unamended soils. These results suggest that MBT is degraded mainly through microbial co-metabolism. Wheat straw amendment resulted in increased transformation of MBT into soil humus. In unamended soil, a major portion of¹⁴C was recovered in fulvic acid and in fractions extracted with organic solvents. Recovery of¹⁴C in non-extractable bound residues (humins) increased as incubation progressed and seemed to be derived from the fulvic acid fraction, which showed a concomitant decrease. More than 99% of the residual¹⁴C in unamended soil consisted of unaltered MBT; the remainder occurred as 1-methyl-1 (benzthiazolyl) urea. In amended soil, a relatively higher percentage of the extractable¹⁴C was found in the metabolite. Small amounts of three unidentified¹⁴C-labelled compounds were also observed. In amended soil, disturbance caused a decrease in extractable-¹⁴C whereas fumigation caused a significant increase, as compared to the untreated control. The effects were more pronounced when the soils were reated at an early stage of incubation. In general, soil disturbance increased the availability of MBT for further transformations while chloroform fumigation decreased the process.     

The isolation and identification of the prosthetic group released from a bound form of abscisic acid

A bound form of abscisic acid, herein called adduct, has been isolated from peas and barley and has been shown to release methyl abscisate upon mild acid hydrolysis. Mass spectrometry of the methyl abscisate released by ²H₂SO₄ in ²H₂O showed that the remainder of adduct was linked as an enolate of the ketone of the moiety that releases methyl abscisate. Some evidence is adduced to suggest that adduct is a metabolic precursor of abscisic acid. The implications of the distribution of adduct between roots and shoots for the plant's response to stress is discussed.